2025-04-21T11:50:09 Running all scenarios...
2025-04-21T11:50:09 Setup file saved as shenandoah.cfg in results directory. 
2025-04-21T11:50:09 Scenario: 
2025-04-21T11:50:09 Camera network proxy for the camera found. Using proxy.
2025-04-21T11:50:09 Analyzing shenandoah Camera images:
2025-04-21T11:50:09 Establishing connection(s)...
2025-04-21T11:50:09 Looking for images...
2025-04-21T11:50:09 Crawling through 34 paths...
2025-04-21T11:50:11 73 possible files found.
2025-04-21T11:50:11 47 possible files found.
2025-04-21T11:50:13 61 possible files found.
2025-04-21T11:50:14 72 possible files found.
2025-04-21T11:50:14 74 possible files found.
2025-04-21T11:50:14 64 possible files found.
2025-04-21T11:50:14 75 possible files found.
2025-04-21T11:50:14 75 possible files found.
2025-04-21T11:50:14 75 possible files found.
2025-04-21T11:50:15 73 possible files found.
2025-04-21T11:50:15 75 possible files found.
2025-04-21T11:50:15 75 possible files found.
2025-04-21T11:50:15 75 possible files found.
2025-04-21T11:50:15 74 possible files found.
2025-04-21T11:50:15 47 possible files found.
2025-04-21T11:50:15 47 possible files found.
2025-04-21T11:50:15 47 possible files found.
2025-04-21T11:50:15 60 possible files found.
2025-04-21T11:50:15 74 possible files found.
2025-04-21T11:50:16 70 possible files found.
2025-04-21T11:50:16 75 possible files found.
2025-04-21T11:50:16 72 possible files found.
2025-04-21T11:50:16 73 possible files found.
2025-04-21T11:50:16 74 possible files found.
2025-04-21T11:50:16 75 possible files found.
2025-04-21T11:50:16 61 possible files found.
2025-04-21T11:50:16 71 possible files found.
2025-04-21T11:50:16 75 possible files found.
2025-04-21T11:50:17 73 possible files found.
2025-04-21T11:50:17 74 possible files found.
2025-04-21T11:50:17 75 possible files found.
2025-04-21T11:50:17 75 possible files found.
2025-04-21T11:50:17 74 possible files found.
2025-04-21T11:50:17 75 possible files found.
2025-04-21T11:50:17 Listing images between dates 2025-03-21 - 2025-04-21 between times of the day 05:15:00 - 18:45:59...
2025-04-21T11:50:17 660 images found.
2025-04-21T11:50:17 Running analysis 1: Plug-in: ml_ann_3_dense_reg_1...
2025-04-21T11:50:17 Reading results of image that are already processed...
2025-04-21T11:50:17 673 images are already processed. 13 images will be processed. Results of 26 images which do not fit the temporal selection will be deleted.
2025-04-21T11:50:17 Checking existing images...
2025-04-21T11:50:17 13 images to be downloaded.
2025-04-21T11:50:17 Downloading/updating images...
2025-04-21T11:50:48 13 images were downloaded.
2025-04-21T11:50:48 Producing polygonic image mask...
2025-04-21T11:50:48 No polygonic masking selected.
2025-04-21T11:50:48 Number of unmasked pixels: 1244160
2025-04-21T11:50:48 Number of images:13
2025-04-21T11:50:48 Testing plugin for batch processing.
2025-04-21T11:50:48 Test list file saved at /FMIprot/srcrun/master_report/src/tmp/18624aa9-6bb8-49f6-a644-a43180826f95/batch_list.csv
2025-04-21T11:50:48 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T11:50:53 Plugin output: Loading the model

2025-04-21T11:50:53 Plugin output: Reading batch list file

2025-04-21T11:50:53 Plugin output: 1 images to process

2025-04-21T11:50:53 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T11:50:53 Plugin output: Processing images and saving results

2025-04-21T11:50:53 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/18624aa9-6bb8-49f6-a644-a43180826f95/batch_results.csv

2025-04-21T11:50:54 
2025-04-21T11:50:54 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/18624aa9-6bb8-49f6-a644-a43180826f95/batch_results.csv
2025-04-21T11:50:54 Test successful. Plugin supports batch processing.
2025-04-21T11:50:54 Creating image and mask list to submit to the plugin.
2025-04-21T11:50:54 List file saved at /FMIprot/srcrun/master_report/src/tmp/18624aa9-6bb8-49f6-a644-a43180826f95/batch_list.csv
2025-04-21T11:50:54 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T11:51:00 Plugin output: Loading the model

2025-04-21T11:51:00 Plugin output: Reading batch list file

2025-04-21T11:51:00 Plugin output: 13 images to process

2025-04-21T11:51:00 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T11:51:00 Plugin output: Processing images and saving results

2025-04-21T11:51:00 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/18624aa9-6bb8-49f6-a644-a43180826f95/batch_results.csv

2025-04-21T11:51:01 
2025-04-21T11:51:01 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/18624aa9-6bb8-49f6-a644-a43180826f95/batch_results.csv
2025-04-21T11:51:01 Parsing results...
2025-04-21T11:51:01 Merging results...
2025-04-21T11:51:01 Storing results...
2025-04-21T11:51:01 Results are stored in /var/www/html/data/operational/phenocam_ml_p3_nrt/shenandoah/S001A001R000.tsv, /var/www/html/data/operational/phenocam_ml_p3_nrt/shenandoah/S001A001R000.tsvx.
2025-04-21T11:51:01 Results are stored in /var/www/html/data/operational/phenocam_ml_p3_nrt/shenandoah/S001A001R000.csv.
2025-04-21T11:51:01 Running analysis 2: Plug-in: ml_cnn_large_kernel_1...
2025-04-21T11:51:01 Reading results of image that are already processed...
2025-04-21T11:51:01 673 images are already processed. 13 images will be processed. Results of 26 images which do not fit the temporal selection will be deleted.
2025-04-21T11:51:01 Checking existing images...
2025-04-21T11:51:01 0 images to be downloaded.
2025-04-21T11:51:01 Producing polygonic image mask...
2025-04-21T11:51:01 No polygonic masking selected.
2025-04-21T11:51:01 Number of unmasked pixels: 1244160
2025-04-21T11:51:01 Number of images:13
2025-04-21T11:51:01 Testing plugin for batch processing.
2025-04-21T11:51:01 Test list file saved at /FMIprot/srcrun/master_report/src/tmp/66119c05-4725-4076-8f0e-a5f6a7a1fa66/batch_list.csv
2025-04-21T11:51:01 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T11:51:06 Plugin output: Loading the model

2025-04-21T11:51:06 Plugin output: Reading batch list file

2025-04-21T11:51:06 Plugin output: 1 images to process

2025-04-21T11:51:06 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T11:51:06 Plugin output: Processing images and saving results

2025-04-21T11:51:06 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/66119c05-4725-4076-8f0e-a5f6a7a1fa66/batch_results.csv

2025-04-21T11:51:07 
2025-04-21T11:51:07 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/66119c05-4725-4076-8f0e-a5f6a7a1fa66/batch_results.csv
2025-04-21T11:51:07 Test successful. Plugin supports batch processing.
2025-04-21T11:51:07 Creating image and mask list to submit to the plugin.
2025-04-21T11:51:07 List file saved at /FMIprot/srcrun/master_report/src/tmp/66119c05-4725-4076-8f0e-a5f6a7a1fa66/batch_list.csv
2025-04-21T11:51:07 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T11:51:13 Plugin output: Loading the model

2025-04-21T11:51:13 Plugin output: Reading batch list file

2025-04-21T11:51:13 Plugin output: 13 images to process

2025-04-21T11:51:13 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T11:51:13 Plugin output: Processing images and saving results

2025-04-21T11:51:13 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/66119c05-4725-4076-8f0e-a5f6a7a1fa66/batch_results.csv

2025-04-21T11:51:14 
2025-04-21T11:51:14 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/66119c05-4725-4076-8f0e-a5f6a7a1fa66/batch_results.csv
2025-04-21T11:51:14 Parsing results...
2025-04-21T11:51:14 Merging results...
2025-04-21T11:51:14 Storing results...
2025-04-21T11:51:14 Results are stored in /var/www/html/data/operational/phenocam_ml_p3_nrt/shenandoah/S001A002R000.tsv, /var/www/html/data/operational/phenocam_ml_p3_nrt/shenandoah/S001A002R000.tsvx.
2025-04-21T11:51:14 Results are stored in /var/www/html/data/operational/phenocam_ml_p3_nrt/shenandoah/S001A002R000.csv.
2025-04-21T11:51:14 Scenario: 
2025-04-21T11:51:14 Removing (13) downloaded images to save space.
2025-04-21T11:51:14 Camera network proxy for the camera found. Using proxy.
2025-04-21T11:51:14 Checking preview image for shenandoah...
2025-04-21T11:51:14 Updating preview image for camera: PHENOCAM - shenandoah
2025-04-21T11:51:14 Looking for the image for the Time of the image to be used as preview image provided by the setup file....
2025-04-21T11:51:14 Establishing connection(s)...
2025-04-21T11:51:14 Looking for images...
2025-04-21T11:51:14 58 possible files found.
2025-04-21T11:51:14 Listing maximum 1 images between dates 2020-12-05 - 2020-12-05 between times of the day 12:20:00 - 12:20:59...
2025-04-21T11:51:14 Listing maximum 1 images between dates 2020-12-05 - 2020-12-05 between times of the day 12:20:00 - 12:20:59...
2025-04-21T11:51:14 0 images found.
2025-04-21T11:51:14 Checking existing images...
2025-04-21T11:51:14 0 images to be downloaded.
2025-04-21T11:51:14 Can not find the image for the Time of the image to be used as preview image provided by the setup file. It is removed from the setup.
2025-04-21T11:51:14 Looking for a suitable image...
2025-04-21T11:51:14 20.04.2025
2025-04-21T11:51:14 Establishing connection(s)...
2025-04-21T11:51:14 Looking for images...
2025-04-21T11:51:15 61 possible files found.
2025-04-21T11:51:15 Listing maximum 1 images between dates 2025-04-20 - 2025-04-20 between times of the day 09:00:00 - 18:59:59...
2025-04-21T11:51:15 Listing maximum 1 images between dates 2025-04-20 - 2025-04-20 between times of the day 09:00:00 - 18:59:59...
2025-04-21T11:51:15 1 images found.
2025-04-21T11:51:15 Checking existing images...
2025-04-21T11:51:15 1 images to be downloaded.
2025-04-21T11:51:15 Downloading/updating images...
2025-04-21T11:51:15 Image: 
2025-04-21T11:51:15 1 images were downloaded.
2025-04-21T11:51:15 Preview image downloaded/updated for camera: PHENOCAM - shenandoah
2025-04-21T11:51:18 Preparing report...
2025-04-21T11:51:18 Result plots are saved as /var/www/html/data/operational/phenocam_ml_p3_nrt/shenandoah/results.html
2025-04-21T11:51:18 Report is saved as /var/www/html/data/operational/phenocam_ml_p3_nrt/shenandoah/report.html