2025-04-21T17:25:33 Running all scenarios...
2025-04-21T17:25:33 Setup file saved as harvardhemlock2.cfg in results directory. 
2025-04-21T17:25:33 Scenario: 
2025-04-21T17:25:33 Camera network proxy for the camera found. Using proxy.
2025-04-21T17:25:33 Analyzing harvardhemlock2 Camera images:
2025-04-21T17:25:33 Establishing connection(s)...
2025-04-21T17:25:33 Looking for images...
2025-04-21T17:25:33 Crawling through 34 paths...
2025-04-21T17:25:34 73 possible files found.
2025-04-21T17:25:35 49 possible files found.
2025-04-21T17:25:36 117 possible files found.
2025-04-21T17:25:38 117 possible files found.
2025-04-21T17:25:38 117 possible files found.
2025-04-21T17:25:38 117 possible files found.
2025-04-21T17:25:38 117 possible files found.
2025-04-21T17:25:38 117 possible files found.
2025-04-21T17:25:38 117 possible files found.
2025-04-21T17:25:38 65 possible files found.
2025-04-21T17:25:39 117 possible files found.
2025-04-21T17:25:39 117 possible files found.
2025-04-21T17:25:39 117 possible files found.
2025-04-21T17:25:39 117 possible files found.
2025-04-21T17:25:39 117 possible files found.
2025-04-21T17:25:39 117 possible files found.
2025-04-21T17:25:39 117 possible files found.
2025-04-21T17:25:39 117 possible files found.
2025-04-21T17:25:39 117 possible files found.
2025-04-21T17:25:39 117 possible files found.
2025-04-21T17:25:40 117 possible files found.
2025-04-21T17:25:40 115 possible files found.
2025-04-21T17:25:40 117 possible files found.
2025-04-21T17:25:40 117 possible files found.
2025-04-21T17:25:40 117 possible files found.
2025-04-21T17:25:40 117 possible files found.
2025-04-21T17:25:40 117 possible files found.
2025-04-21T17:25:40 117 possible files found.
2025-04-21T17:25:40 117 possible files found.
2025-04-21T17:25:40 117 possible files found.
2025-04-21T17:25:41 117 possible files found.
2025-04-21T17:25:41 117 possible files found.
2025-04-21T17:25:41 117 possible files found.
2025-04-21T17:25:41 117 possible files found.
2025-04-21T17:25:41 Listing images between dates 2025-03-21 - 2025-04-21 between times of the day 05:15:00 - 18:45:59...
2025-04-21T17:25:41 816 images found.
2025-04-21T17:25:41 Running analysis 1: Plug-in: ml_ann_3_dense_reg_1...
2025-04-21T17:25:41 Reading results of image that are already processed...
2025-04-21T17:25:41 816 images are already processed. 27 images will be processed. Results of 27 images which do not fit the temporal selection will be deleted.
2025-04-21T17:25:41 Checking existing images...
2025-04-21T17:25:41 27 images to be downloaded.
2025-04-21T17:25:41 Downloading/updating images...
2025-04-21T17:26:28 27 images were downloaded.
2025-04-21T17:26:28 Producing polygonic image mask...
2025-04-21T17:26:28 No polygonic masking selected.
2025-04-21T17:26:28 Number of unmasked pixels: 1244160
2025-04-21T17:26:28 Number of images:27
2025-04-21T17:26:28 Testing plugin for batch processing.
2025-04-21T17:26:28 Test list file saved at /FMIprot/srcrun/master_report/src/tmp/e404c2a1-cd8d-44df-9aee-c7e671cae2da/batch_list.csv
2025-04-21T17:26:28 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T17:26:35 Plugin output: Loading the model

2025-04-21T17:26:35 Plugin output: Reading batch list file

2025-04-21T17:26:35 Plugin output: 1 images to process

2025-04-21T17:26:35 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T17:26:35 Plugin output: Processing images and saving results

2025-04-21T17:26:35 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/e404c2a1-cd8d-44df-9aee-c7e671cae2da/batch_results.csv

2025-04-21T17:26:35 
2025-04-21T17:26:35 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/e404c2a1-cd8d-44df-9aee-c7e671cae2da/batch_results.csv
2025-04-21T17:26:35 Test successful. Plugin supports batch processing.
2025-04-21T17:26:35 Creating image and mask list to submit to the plugin.
2025-04-21T17:26:35 List file saved at /FMIprot/srcrun/master_report/src/tmp/e404c2a1-cd8d-44df-9aee-c7e671cae2da/batch_list.csv
2025-04-21T17:26:35 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T17:26:44 Plugin output: Loading the model

2025-04-21T17:26:44 Plugin output: Reading batch list file

2025-04-21T17:26:44 Plugin output: 27 images to process

2025-04-21T17:26:44 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T17:26:44 Plugin output: Processing images and saving results

2025-04-21T17:26:44 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/e404c2a1-cd8d-44df-9aee-c7e671cae2da/batch_results.csv

2025-04-21T17:26:45 
2025-04-21T17:26:45 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/e404c2a1-cd8d-44df-9aee-c7e671cae2da/batch_results.csv
2025-04-21T17:26:45 Parsing results...
2025-04-21T17:26:45 Merging results...
2025-04-21T17:26:45 Storing results...
2025-04-21T17:26:45 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardhemlock2/S001A001R000.tsv, /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardhemlock2/S001A001R000.tsvx.
2025-04-21T17:26:45 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardhemlock2/S001A001R000.csv.
2025-04-21T17:26:45 Running analysis 2: Plug-in: ml_cnn_large_kernel_1...
2025-04-21T17:26:45 Reading results of image that are already processed...
2025-04-21T17:26:45 816 images are already processed. 27 images will be processed. Results of 27 images which do not fit the temporal selection will be deleted.
2025-04-21T17:26:45 Checking existing images...
2025-04-21T17:26:45 0 images to be downloaded.
2025-04-21T17:26:45 Producing polygonic image mask...
2025-04-21T17:26:45 No polygonic masking selected.
2025-04-21T17:26:46 Number of unmasked pixels: 1244160
2025-04-21T17:26:46 Number of images:27
2025-04-21T17:26:46 Testing plugin for batch processing.
2025-04-21T17:26:46 Test list file saved at /FMIprot/srcrun/master_report/src/tmp/14825e7c-d9de-4da7-b3da-245d3d4749b8/batch_list.csv
2025-04-21T17:26:46 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T17:26:50 Plugin output: Loading the model

2025-04-21T17:26:50 Plugin output: Reading batch list file

2025-04-21T17:26:50 Plugin output: 1 images to process

2025-04-21T17:26:50 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T17:26:50 Plugin output: Processing images and saving results

2025-04-21T17:26:50 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/14825e7c-d9de-4da7-b3da-245d3d4749b8/batch_results.csv

2025-04-21T17:26:51 
2025-04-21T17:26:51 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/14825e7c-d9de-4da7-b3da-245d3d4749b8/batch_results.csv
2025-04-21T17:26:51 Test successful. Plugin supports batch processing.
2025-04-21T17:26:51 Creating image and mask list to submit to the plugin.
2025-04-21T17:26:51 List file saved at /FMIprot/srcrun/master_report/src/tmp/14825e7c-d9de-4da7-b3da-245d3d4749b8/batch_list.csv
2025-04-21T17:26:51 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T17:26:59 Plugin output: Loading the model

2025-04-21T17:26:59 Plugin output: Reading batch list file

2025-04-21T17:26:59 Plugin output: 27 images to process

2025-04-21T17:26:59 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T17:26:59 Plugin output: Processing images and saving results

2025-04-21T17:26:59 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/14825e7c-d9de-4da7-b3da-245d3d4749b8/batch_results.csv

2025-04-21T17:26:59 
2025-04-21T17:26:59 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/14825e7c-d9de-4da7-b3da-245d3d4749b8/batch_results.csv
2025-04-21T17:26:59 Parsing results...
2025-04-21T17:26:59 Merging results...
2025-04-21T17:26:59 Storing results...
2025-04-21T17:26:59 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardhemlock2/S001A002R000.tsv, /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardhemlock2/S001A002R000.tsvx.
2025-04-21T17:26:59 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardhemlock2/S001A002R000.csv.
2025-04-21T17:26:59 Scenario: 
2025-04-21T17:26:59 Removing (27) downloaded images to save space.
2025-04-21T17:26:59 Camera network proxy for the camera found. Using proxy.
2025-04-21T17:26:59 Checking preview image for harvardhemlock2...
2025-04-21T17:26:59 Updating preview image for camera: PHENOCAM - harvardhemlock2
2025-04-21T17:26:59 Looking for the image for the Time of the image to be used as preview image provided by the setup file....
2025-04-21T17:26:59 Establishing connection(s)...
2025-04-21T17:26:59 Looking for images...
2025-04-21T17:26:59 110 possible files found.
2025-04-21T17:26:59 Listing maximum 1 images between dates 2020-12-05 - 2020-12-05 between times of the day 12:20:00 - 12:20:59...
2025-04-21T17:26:59 Listing maximum 1 images between dates 2020-12-05 - 2020-12-05 between times of the day 12:20:00 - 12:20:59...
2025-04-21T17:26:59 0 images found.
2025-04-21T17:26:59 Checking existing images...
2025-04-21T17:26:59 0 images to be downloaded.
2025-04-21T17:26:59 Can not find the image for the Time of the image to be used as preview image provided by the setup file. It is removed from the setup.
2025-04-21T17:26:59 Looking for a suitable image...
2025-04-21T17:26:59 20.04.2025
2025-04-21T17:26:59 Establishing connection(s)...
2025-04-21T17:26:59 Looking for images...
2025-04-21T17:27:01 117 possible files found.
2025-04-21T17:27:01 Listing maximum 1 images between dates 2025-04-20 - 2025-04-20 between times of the day 09:00:00 - 18:59:59...
2025-04-21T17:27:01 Listing maximum 1 images between dates 2025-04-20 - 2025-04-20 between times of the day 09:00:00 - 18:59:59...
2025-04-21T17:27:01 1 images found.
2025-04-21T17:27:01 Checking existing images...
2025-04-21T17:27:01 1 images to be downloaded.
2025-04-21T17:27:01 Downloading/updating images...
2025-04-21T17:27:01 Image: 
2025-04-21T17:27:01 1 images were downloaded.
2025-04-21T17:27:01 Preview image downloaded/updated for camera: PHENOCAM - harvardhemlock2
2025-04-21T17:27:04 Preparing report...
2025-04-21T17:27:04 Result plots are saved as /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardhemlock2/results.html
2025-04-21T17:27:04 Report is saved as /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardhemlock2/report.html