2025-04-21T17:20:33 Running all scenarios...
2025-04-21T17:20:33 Setup file saved as harvardems2.cfg in results directory. 
2025-04-21T17:20:33 Scenario: 
2025-04-21T17:20:33 Camera network proxy for the camera found. Using proxy.
2025-04-21T17:20:33 Analyzing harvardems2 Camera images:
2025-04-21T17:20:33 Establishing connection(s)...
2025-04-21T17:20:33 Looking for images...
2025-04-21T17:20:33 Crawling through 34 paths...
2025-04-21T17:20:34 73 possible files found.
2025-04-21T17:20:35 49 possible files found.
2025-04-21T17:20:37 125 possible files found.
2025-04-21T17:20:38 125 possible files found.
2025-04-21T17:20:38 125 possible files found.
2025-04-21T17:20:38 125 possible files found.
2025-04-21T17:20:38 125 possible files found.
2025-04-21T17:20:38 125 possible files found.
2025-04-21T17:20:38 125 possible files found.
2025-04-21T17:20:39 69 possible files found.
2025-04-21T17:20:39 125 possible files found.
2025-04-21T17:20:39 125 possible files found.
2025-04-21T17:20:39 125 possible files found.
2025-04-21T17:20:39 125 possible files found.
2025-04-21T17:20:39 123 possible files found.
2025-04-21T17:20:39 125 possible files found.
2025-04-21T17:20:39 125 possible files found.
2025-04-21T17:20:39 125 possible files found.
2025-04-21T17:20:39 125 possible files found.
2025-04-21T17:20:40 125 possible files found.
2025-04-21T17:20:40 91 possible files found.
2025-04-21T17:20:40 83 possible files found.
2025-04-21T17:20:40 125 possible files found.
2025-04-21T17:20:40 125 possible files found.
2025-04-21T17:20:40 125 possible files found.
2025-04-21T17:20:40 125 possible files found.
2025-04-21T17:20:40 125 possible files found.
2025-04-21T17:20:40 125 possible files found.
2025-04-21T17:20:41 109 possible files found.
2025-04-21T17:20:41 105 possible files found.
2025-04-21T17:20:41 125 possible files found.
2025-04-21T17:20:41 125 possible files found.
2025-04-21T17:20:41 125 possible files found.
2025-04-21T17:20:41 125 possible files found.
2025-04-21T17:20:41 Listing images between dates 2025-03-21 - 2025-04-21 between times of the day 05:15:00 - 18:45:59...
2025-04-21T17:20:41 786 images found.
2025-04-21T17:20:41 Running analysis 1: Plug-in: ml_ann_3_dense_reg_1...
2025-04-21T17:20:41 Reading results of image that are already processed...
2025-04-21T17:20:42 786 images are already processed. 27 images will be processed. Results of 27 images which do not fit the temporal selection will be deleted.
2025-04-21T17:20:42 Checking existing images...
2025-04-21T17:20:42 27 images to be downloaded.
2025-04-21T17:20:42 Downloading/updating images...
2025-04-21T17:21:43 27 images were downloaded.
2025-04-21T17:21:43 Producing polygonic image mask...
2025-04-21T17:21:43 No polygonic masking selected.
2025-04-21T17:21:43 Number of unmasked pixels: 1244160
2025-04-21T17:21:43 Number of images:27
2025-04-21T17:21:43 Testing plugin for batch processing.
2025-04-21T17:21:43 Test list file saved at /FMIprot/srcrun/master_report/src/tmp/81f3190b-0d16-4e72-8b4c-660c16d712a7/batch_list.csv
2025-04-21T17:21:43 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T17:21:48 Plugin output: Loading the model

2025-04-21T17:21:48 Plugin output: Reading batch list file

2025-04-21T17:21:48 Plugin output: 1 images to process

2025-04-21T17:21:48 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T17:21:48 Plugin output: Processing images and saving results

2025-04-21T17:21:48 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/81f3190b-0d16-4e72-8b4c-660c16d712a7/batch_results.csv

2025-04-21T17:21:48 
2025-04-21T17:21:48 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/81f3190b-0d16-4e72-8b4c-660c16d712a7/batch_results.csv
2025-04-21T17:21:48 Test successful. Plugin supports batch processing.
2025-04-21T17:21:48 Creating image and mask list to submit to the plugin.
2025-04-21T17:21:48 List file saved at /FMIprot/srcrun/master_report/src/tmp/81f3190b-0d16-4e72-8b4c-660c16d712a7/batch_list.csv
2025-04-21T17:21:48 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T17:21:59 Plugin output: Loading the model

2025-04-21T17:21:59 Plugin output: Reading batch list file

2025-04-21T17:21:59 Plugin output: 27 images to process

2025-04-21T17:21:59 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T17:21:59 Plugin output: Processing images and saving results

2025-04-21T17:21:59 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/81f3190b-0d16-4e72-8b4c-660c16d712a7/batch_results.csv

2025-04-21T17:21:59 
2025-04-21T17:21:59 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/81f3190b-0d16-4e72-8b4c-660c16d712a7/batch_results.csv
2025-04-21T17:21:59 Parsing results...
2025-04-21T17:21:59 Merging results...
2025-04-21T17:21:59 Storing results...
2025-04-21T17:21:59 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardems2/S001A001R000.tsv, /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardems2/S001A001R000.tsvx.
2025-04-21T17:21:59 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardems2/S001A001R000.csv.
2025-04-21T17:21:59 Running analysis 2: Plug-in: ml_cnn_large_kernel_1...
2025-04-21T17:22:00 Reading results of image that are already processed...
2025-04-21T17:22:00 786 images are already processed. 27 images will be processed. Results of 27 images which do not fit the temporal selection will be deleted.
2025-04-21T17:22:00 Checking existing images...
2025-04-21T17:22:00 0 images to be downloaded.
2025-04-21T17:22:00 Producing polygonic image mask...
2025-04-21T17:22:00 No polygonic masking selected.
2025-04-21T17:22:00 Number of unmasked pixels: 1244160
2025-04-21T17:22:00 Number of images:27
2025-04-21T17:22:00 Testing plugin for batch processing.
2025-04-21T17:22:00 Test list file saved at /FMIprot/srcrun/master_report/src/tmp/39077ea7-2ded-40cb-9a24-3cc87a467bf7/batch_list.csv
2025-04-21T17:22:00 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T17:22:04 Plugin output: Loading the model

2025-04-21T17:22:04 Plugin output: Reading batch list file

2025-04-21T17:22:04 Plugin output: 1 images to process

2025-04-21T17:22:04 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T17:22:04 Plugin output: Processing images and saving results

2025-04-21T17:22:04 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/39077ea7-2ded-40cb-9a24-3cc87a467bf7/batch_results.csv

2025-04-21T17:22:04 
2025-04-21T17:22:04 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/39077ea7-2ded-40cb-9a24-3cc87a467bf7/batch_results.csv
2025-04-21T17:22:04 Test successful. Plugin supports batch processing.
2025-04-21T17:22:04 Creating image and mask list to submit to the plugin.
2025-04-21T17:22:04 List file saved at /FMIprot/srcrun/master_report/src/tmp/39077ea7-2ded-40cb-9a24-3cc87a467bf7/batch_list.csv
2025-04-21T17:22:04 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T17:22:13 Plugin output: Loading the model

2025-04-21T17:22:13 Plugin output: Reading batch list file

2025-04-21T17:22:13 Plugin output: 27 images to process

2025-04-21T17:22:13 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T17:22:13 Plugin output: Processing images and saving results

2025-04-21T17:22:13 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/39077ea7-2ded-40cb-9a24-3cc87a467bf7/batch_results.csv

2025-04-21T17:22:14 
2025-04-21T17:22:14 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/39077ea7-2ded-40cb-9a24-3cc87a467bf7/batch_results.csv
2025-04-21T17:22:14 Parsing results...
2025-04-21T17:22:14 Merging results...
2025-04-21T17:22:14 Storing results...
2025-04-21T17:22:14 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardems2/S001A002R000.tsv, /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardems2/S001A002R000.tsvx.
2025-04-21T17:22:14 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardems2/S001A002R000.csv.
2025-04-21T17:22:14 Scenario: 
2025-04-21T17:22:14 Removing (27) downloaded images to save space.
2025-04-21T17:22:14 Camera network proxy for the camera found. Using proxy.
2025-04-21T17:22:14 Checking preview image for harvardems2...
2025-04-21T17:22:14 Updating preview image for camera: PHENOCAM - harvardems2
2025-04-21T17:22:14 Looking for the image for the Time of the image to be used as preview image provided by the setup file....
2025-04-21T17:22:14 Establishing connection(s)...
2025-04-21T17:22:14 Looking for images...
2025-04-21T17:22:14 No files found. Connection may be offline.
2025-04-21T17:22:14 Listing maximum 1 images between dates 2020-12-05 - 2020-12-05 between times of the day 12:20:00 - 12:20:59...
2025-04-21T17:22:14 0 images found.
2025-04-21T17:22:14 Can not find the image for the Time of the image to be used as preview image provided by the setup file. It is removed from the setup.
2025-04-21T17:22:14 Looking for a suitable image...
2025-04-21T17:22:14 20.04.2025
2025-04-21T17:22:14 Establishing connection(s)...
2025-04-21T17:22:14 Looking for images...
2025-04-21T17:22:15 125 possible files found.
2025-04-21T17:22:15 Listing maximum 1 images between dates 2025-04-20 - 2025-04-20 between times of the day 09:00:00 - 18:59:59...
2025-04-21T17:22:15 Listing maximum 1 images between dates 2025-04-20 - 2025-04-20 between times of the day 09:00:00 - 18:59:59...
2025-04-21T17:22:15 1 images found.
2025-04-21T17:22:15 Checking existing images...
2025-04-21T17:22:15 1 images to be downloaded.
2025-04-21T17:22:15 Downloading/updating images...
2025-04-21T17:22:15 Image: 
2025-04-21T17:22:15 1 images were downloaded.
2025-04-21T17:22:15 Preview image downloaded/updated for camera: PHENOCAM - harvardems2
2025-04-21T17:22:20 Preparing report...
2025-04-21T17:22:20 Result plots are saved as /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardems2/results.html
2025-04-21T17:22:20 Report is saved as /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardems2/report.html