2025-04-21T17:15:05 Running all scenarios...
2025-04-21T17:15:05 Setup file saved as harvardbarn.cfg in results directory. 
2025-04-21T17:15:05 Scenario: 
2025-04-21T17:15:05 Camera network proxy for the camera found. Using proxy.
2025-04-21T17:15:05 Analyzing harvardbarn Camera images:
2025-04-21T17:15:05 Establishing connection(s)...
2025-04-21T17:15:05 Looking for images...
2025-04-21T17:15:05 Crawling through 34 paths...
2025-04-21T17:15:07 73 possible files found.
2025-04-21T17:15:07 49 possible files found.
2025-04-21T17:15:09 125 possible files found.
2025-04-21T17:15:10 125 possible files found.
2025-04-21T17:15:10 125 possible files found.
2025-04-21T17:15:10 125 possible files found.
2025-04-21T17:15:10 125 possible files found.
2025-04-21T17:15:11 125 possible files found.
2025-04-21T17:15:11 125 possible files found.
2025-04-21T17:15:11 127 possible files found.
2025-04-21T17:15:11 125 possible files found.
2025-04-21T17:15:11 125 possible files found.
2025-04-21T17:15:11 125 possible files found.
2025-04-21T17:15:11 125 possible files found.
2025-04-21T17:15:11 123 possible files found.
2025-04-21T17:15:11 125 possible files found.
2025-04-21T17:15:11 125 possible files found.
2025-04-21T17:15:11 125 possible files found.
2025-04-21T17:15:12 125 possible files found.
2025-04-21T17:15:12 125 possible files found.
2025-04-21T17:15:12 125 possible files found.
2025-04-21T17:15:12 125 possible files found.
2025-04-21T17:15:12 125 possible files found.
2025-04-21T17:15:12 125 possible files found.
2025-04-21T17:15:12 125 possible files found.
2025-04-21T17:15:12 125 possible files found.
2025-04-21T17:15:12 125 possible files found.
2025-04-21T17:15:12 125 possible files found.
2025-04-21T17:15:12 125 possible files found.
2025-04-21T17:15:12 125 possible files found.
2025-04-21T17:15:13 125 possible files found.
2025-04-21T17:15:13 125 possible files found.
2025-04-21T17:15:13 125 possible files found.
2025-04-21T17:15:13 125 possible files found.
2025-04-21T17:15:13 Listing images between dates 2025-03-21 - 2025-04-21 between times of the day 05:15:00 - 18:45:59...
2025-04-21T17:15:13 838 images found.
2025-04-21T17:15:13 Running analysis 1: Plug-in: ml_ann_3_dense_reg_1...
2025-04-21T17:15:13 Reading results of image that are already processed...
2025-04-21T17:15:13 838 images are already processed. 27 images will be processed. Results of 27 images which do not fit the temporal selection will be deleted.
2025-04-21T17:15:13 Checking existing images...
2025-04-21T17:15:13 27 images to be downloaded.
2025-04-21T17:15:13 Downloading/updating images...
2025-04-21T17:16:17 27 images were downloaded.
2025-04-21T17:16:17 Producing polygonic image mask...
2025-04-21T17:16:17 No polygonic masking selected.
2025-04-21T17:16:17 Number of unmasked pixels: 1244160
2025-04-21T17:16:17 Number of images:27
2025-04-21T17:16:17 Testing plugin for batch processing.
2025-04-21T17:16:17 Test list file saved at /FMIprot/srcrun/master_report/src/tmp/cacb295f-530a-423e-b546-00ce5e57bcc5/batch_list.csv
2025-04-21T17:16:17 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T17:16:23 Plugin output: Loading the model

2025-04-21T17:16:23 Plugin output: Reading batch list file

2025-04-21T17:16:23 Plugin output: 1 images to process

2025-04-21T17:16:23 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T17:16:23 Plugin output: Processing images and saving results

2025-04-21T17:16:23 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/cacb295f-530a-423e-b546-00ce5e57bcc5/batch_results.csv

2025-04-21T17:16:23 
2025-04-21T17:16:23 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/cacb295f-530a-423e-b546-00ce5e57bcc5/batch_results.csv
2025-04-21T17:16:23 Test successful. Plugin supports batch processing.
2025-04-21T17:16:23 Creating image and mask list to submit to the plugin.
2025-04-21T17:16:23 List file saved at /FMIprot/srcrun/master_report/src/tmp/cacb295f-530a-423e-b546-00ce5e57bcc5/batch_list.csv
2025-04-21T17:16:23 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T17:16:35 Plugin output: Loading the model

2025-04-21T17:16:35 Plugin output: Reading batch list file

2025-04-21T17:16:35 Plugin output: 27 images to process

2025-04-21T17:16:35 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T17:16:35 Plugin output: Processing images and saving results

2025-04-21T17:16:35 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/cacb295f-530a-423e-b546-00ce5e57bcc5/batch_results.csv

2025-04-21T17:16:35 
2025-04-21T17:16:35 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/cacb295f-530a-423e-b546-00ce5e57bcc5/batch_results.csv
2025-04-21T17:16:35 Parsing results...
2025-04-21T17:16:35 Merging results...
2025-04-21T17:16:35 Storing results...
2025-04-21T17:16:35 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardbarn/S001A001R000.tsv, /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardbarn/S001A001R000.tsvx.
2025-04-21T17:16:35 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardbarn/S001A001R000.csv.
2025-04-21T17:16:35 Running analysis 2: Plug-in: ml_cnn_large_kernel_1...
2025-04-21T17:16:35 Reading results of image that are already processed...
2025-04-21T17:16:36 838 images are already processed. 27 images will be processed. Results of 27 images which do not fit the temporal selection will be deleted.
2025-04-21T17:16:36 Checking existing images...
2025-04-21T17:16:36 0 images to be downloaded.
2025-04-21T17:16:36 Producing polygonic image mask...
2025-04-21T17:16:36 No polygonic masking selected.
2025-04-21T17:16:36 Number of unmasked pixels: 1244160
2025-04-21T17:16:36 Number of images:27
2025-04-21T17:16:36 Testing plugin for batch processing.
2025-04-21T17:16:36 Test list file saved at /FMIprot/srcrun/master_report/src/tmp/eb767c70-533d-45b4-bf98-113c9d63768a/batch_list.csv
2025-04-21T17:16:36 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T17:16:41 Plugin output: Loading the model

2025-04-21T17:16:41 Plugin output: Reading batch list file

2025-04-21T17:16:41 Plugin output: 1 images to process

2025-04-21T17:16:41 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T17:16:41 Plugin output: Processing images and saving results

2025-04-21T17:16:41 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/eb767c70-533d-45b4-bf98-113c9d63768a/batch_results.csv

2025-04-21T17:16:42 
2025-04-21T17:16:42 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/eb767c70-533d-45b4-bf98-113c9d63768a/batch_results.csv
2025-04-21T17:16:42 Test successful. Plugin supports batch processing.
2025-04-21T17:16:42 Creating image and mask list to submit to the plugin.
2025-04-21T17:16:42 List file saved at /FMIprot/srcrun/master_report/src/tmp/eb767c70-533d-45b4-bf98-113c9d63768a/batch_list.csv
2025-04-21T17:16:42 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T17:16:51 Plugin output: Loading the model

2025-04-21T17:16:51 Plugin output: Reading batch list file

2025-04-21T17:16:51 Plugin output: 27 images to process

2025-04-21T17:16:51 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T17:16:51 Plugin output: Processing images and saving results

2025-04-21T17:16:51 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/eb767c70-533d-45b4-bf98-113c9d63768a/batch_results.csv

2025-04-21T17:16:52 
2025-04-21T17:16:52 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/eb767c70-533d-45b4-bf98-113c9d63768a/batch_results.csv
2025-04-21T17:16:52 Parsing results...
2025-04-21T17:16:52 Merging results...
2025-04-21T17:16:52 Storing results...
2025-04-21T17:16:52 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardbarn/S001A002R000.tsv, /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardbarn/S001A002R000.tsvx.
2025-04-21T17:16:52 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardbarn/S001A002R000.csv.
2025-04-21T17:16:52 Scenario: 
2025-04-21T17:16:52 Removing (27) downloaded images to save space.
2025-04-21T17:16:52 Camera network proxy for the camera found. Using proxy.
2025-04-21T17:16:52 Checking preview image for harvardbarn...
2025-04-21T17:16:52 Updating preview image for camera: PHENOCAM - harvardbarn
2025-04-21T17:16:52 Looking for the image for the Time of the image to be used as preview image provided by the setup file....
2025-04-21T17:16:52 Establishing connection(s)...
2025-04-21T17:16:52 Looking for images...
2025-04-21T17:16:52 114 possible files found.
2025-04-21T17:16:52 Listing maximum 1 images between dates 2020-12-05 - 2020-12-05 between times of the day 12:20:00 - 12:20:59...
2025-04-21T17:16:52 Listing maximum 1 images between dates 2020-12-05 - 2020-12-05 between times of the day 12:20:00 - 12:20:59...
2025-04-21T17:16:52 0 images found.
2025-04-21T17:16:52 Checking existing images...
2025-04-21T17:16:52 0 images to be downloaded.
2025-04-21T17:16:52 Can not find the image for the Time of the image to be used as preview image provided by the setup file. It is removed from the setup.
2025-04-21T17:16:52 Looking for a suitable image...
2025-04-21T17:16:52 20.04.2025
2025-04-21T17:16:52 Establishing connection(s)...
2025-04-21T17:16:52 Looking for images...
2025-04-21T17:16:54 125 possible files found.
2025-04-21T17:16:54 Listing maximum 1 images between dates 2025-04-20 - 2025-04-20 between times of the day 09:00:00 - 18:59:59...
2025-04-21T17:16:54 Listing maximum 1 images between dates 2025-04-20 - 2025-04-20 between times of the day 09:00:00 - 18:59:59...
2025-04-21T17:16:54 1 images found.
2025-04-21T17:16:54 Checking existing images...
2025-04-21T17:16:54 1 images to be downloaded.
2025-04-21T17:16:54 Downloading/updating images...
2025-04-21T17:16:54 Image: 
2025-04-21T17:16:54 1 images were downloaded.
2025-04-21T17:16:54 Preview image downloaded/updated for camera: PHENOCAM - harvardbarn
2025-04-21T17:16:57 Preparing report...
2025-04-21T17:16:57 Result plots are saved as /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardbarn/results.html
2025-04-21T17:16:57 Report is saved as /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardbarn/report.html