2025-04-21T17:18:42 Running all scenarios...
2025-04-21T17:18:42 Setup file saved as harvard.cfg in results directory. 
2025-04-21T17:18:42 Scenario: 
2025-04-21T17:18:42 Camera network proxy for the camera found. Using proxy.
2025-04-21T17:18:42 Analyzing harvard Camera images:
2025-04-21T17:18:42 Establishing connection(s)...
2025-04-21T17:18:42 Looking for images...
2025-04-21T17:18:42 Crawling through 34 paths...
2025-04-21T17:18:44 73 possible files found.
2025-04-21T17:18:45 49 possible files found.
2025-04-21T17:18:46 125 possible files found.
2025-04-21T17:18:47 125 possible files found.
2025-04-21T17:18:48 125 possible files found.
2025-04-21T17:18:48 125 possible files found.
2025-04-21T17:18:48 125 possible files found.
2025-04-21T17:18:48 125 possible files found.
2025-04-21T17:18:48 93 possible files found.
2025-04-21T17:18:48 47 possible files found.
2025-04-21T17:18:48 44 possible files found.
2025-04-21T17:18:48 44 possible files found.
2025-04-21T17:18:48 44 possible files found.
2025-04-21T17:18:48 44 possible files found.
2025-04-21T17:18:49 44 possible files found.
2025-04-21T17:18:49 44 possible files found.
2025-04-21T17:18:49 44 possible files found.
2025-04-21T17:18:49 44 possible files found.
2025-04-21T17:18:49 44 possible files found.
2025-04-21T17:18:49 44 possible files found.
2025-04-21T17:18:49 44 possible files found.
2025-04-21T17:18:49 44 possible files found.
2025-04-21T17:18:49 47 possible files found.
2025-04-21T17:18:49 47 possible files found.
2025-04-21T17:18:50 47 possible files found.
2025-04-21T17:18:50 47 possible files found.
2025-04-21T17:18:50 47 possible files found.
2025-04-21T17:18:50 47 possible files found.
2025-04-21T17:18:50 47 possible files found.
2025-04-21T17:18:50 105 possible files found.
2025-04-21T17:18:50 125 possible files found.
2025-04-21T17:18:50 125 possible files found.
2025-04-21T17:18:50 125 possible files found.
2025-04-21T17:18:50 125 possible files found.
2025-04-21T17:18:50 Listing images between dates 2025-03-21 - 2025-04-21 between times of the day 05:15:00 - 18:45:59...
2025-04-21T17:18:50 283 images found.
2025-04-21T17:18:50 Running analysis 1: Plug-in: ml_ann_3_dense_reg_1...
2025-04-21T17:18:50 Reading results of image that are already processed...
2025-04-21T17:18:51 283 images are already processed. 27 images will be processed. Results of 27 images which do not fit the temporal selection will be deleted.
2025-04-21T17:18:51 Checking existing images...
2025-04-21T17:18:51 27 images to be downloaded.
2025-04-21T17:18:51 Downloading/updating images...
2025-04-21T17:19:31 27 images were downloaded.
2025-04-21T17:19:31 Producing polygonic image mask...
2025-04-21T17:19:31 No polygonic masking selected.
2025-04-21T17:19:31 Number of unmasked pixels: 1244160
2025-04-21T17:19:31 Number of images:27
2025-04-21T17:19:31 Testing plugin for batch processing.
2025-04-21T17:19:31 Test list file saved at /FMIprot/srcrun/master_report/src/tmp/f70065f0-e559-4ec2-8042-0e7f2ebb1d91/batch_list.csv
2025-04-21T17:19:31 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T17:19:35 Plugin output: Loading the model

2025-04-21T17:19:35 Plugin output: Reading batch list file

2025-04-21T17:19:35 Plugin output: 1 images to process

2025-04-21T17:19:35 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T17:19:35 Plugin output: Processing images and saving results

2025-04-21T17:19:35 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/f70065f0-e559-4ec2-8042-0e7f2ebb1d91/batch_results.csv

2025-04-21T17:19:36 
2025-04-21T17:19:36 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/f70065f0-e559-4ec2-8042-0e7f2ebb1d91/batch_results.csv
2025-04-21T17:19:36 Test successful. Plugin supports batch processing.
2025-04-21T17:19:36 Creating image and mask list to submit to the plugin.
2025-04-21T17:19:36 List file saved at /FMIprot/srcrun/master_report/src/tmp/f70065f0-e559-4ec2-8042-0e7f2ebb1d91/batch_list.csv
2025-04-21T17:19:36 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T17:19:45 Plugin output: Loading the model

2025-04-21T17:19:45 Plugin output: Reading batch list file

2025-04-21T17:19:45 Plugin output: 27 images to process

2025-04-21T17:19:45 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T17:19:45 Plugin output: Processing images and saving results

2025-04-21T17:19:45 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/f70065f0-e559-4ec2-8042-0e7f2ebb1d91/batch_results.csv

2025-04-21T17:19:45 
2025-04-21T17:19:45 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/f70065f0-e559-4ec2-8042-0e7f2ebb1d91/batch_results.csv
2025-04-21T17:19:45 Parsing results...
2025-04-21T17:19:45 Merging results...
2025-04-21T17:19:45 Storing results...
2025-04-21T17:19:45 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvard/S001A001R000.tsv, /var/www/html/data/operational/phenocam_ml_p1_nrt/harvard/S001A001R000.tsvx.
2025-04-21T17:19:45 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvard/S001A001R000.csv.
2025-04-21T17:19:45 Running analysis 2: Plug-in: ml_cnn_large_kernel_1...
2025-04-21T17:19:45 Reading results of image that are already processed...
2025-04-21T17:19:46 283 images are already processed. 27 images will be processed. Results of 27 images which do not fit the temporal selection will be deleted.
2025-04-21T17:19:46 Checking existing images...
2025-04-21T17:19:46 0 images to be downloaded.
2025-04-21T17:19:46 Producing polygonic image mask...
2025-04-21T17:19:46 No polygonic masking selected.
2025-04-21T17:19:46 Number of unmasked pixels: 1244160
2025-04-21T17:19:46 Number of images:27
2025-04-21T17:19:46 Testing plugin for batch processing.
2025-04-21T17:19:46 Test list file saved at /FMIprot/srcrun/master_report/src/tmp/074888ed-d118-4d17-974f-cb786bec28ac/batch_list.csv
2025-04-21T17:19:46 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T17:19:50 Plugin output: Loading the model

2025-04-21T17:19:50 Plugin output: Reading batch list file

2025-04-21T17:19:50 Plugin output: 1 images to process

2025-04-21T17:19:50 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T17:19:50 Plugin output: Processing images and saving results

2025-04-21T17:19:50 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/074888ed-d118-4d17-974f-cb786bec28ac/batch_results.csv

2025-04-21T17:19:50 
2025-04-21T17:19:50 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/074888ed-d118-4d17-974f-cb786bec28ac/batch_results.csv
2025-04-21T17:19:50 Test successful. Plugin supports batch processing.
2025-04-21T17:19:50 Creating image and mask list to submit to the plugin.
2025-04-21T17:19:50 List file saved at /FMIprot/srcrun/master_report/src/tmp/074888ed-d118-4d17-974f-cb786bec28ac/batch_list.csv
2025-04-21T17:19:50 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-21T17:19:58 Plugin output: Loading the model

2025-04-21T17:19:58 Plugin output: Reading batch list file

2025-04-21T17:19:58 Plugin output: 27 images to process

2025-04-21T17:19:58 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-21T17:19:58 Plugin output: Processing images and saving results

2025-04-21T17:19:58 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/074888ed-d118-4d17-974f-cb786bec28ac/batch_results.csv

2025-04-21T17:19:59 
2025-04-21T17:19:59 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/074888ed-d118-4d17-974f-cb786bec28ac/batch_results.csv
2025-04-21T17:19:59 Parsing results...
2025-04-21T17:19:59 Merging results...
2025-04-21T17:19:59 Storing results...
2025-04-21T17:19:59 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvard/S001A002R000.tsv, /var/www/html/data/operational/phenocam_ml_p1_nrt/harvard/S001A002R000.tsvx.
2025-04-21T17:19:59 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvard/S001A002R000.csv.
2025-04-21T17:19:59 Scenario: 
2025-04-21T17:19:59 Removing (27) downloaded images to save space.
2025-04-21T17:19:59 Camera network proxy for the camera found. Using proxy.
2025-04-21T17:19:59 Checking preview image for harvard...
2025-04-21T17:19:59 Updating preview image for camera: PHENOCAM - harvard
2025-04-21T17:19:59 Looking for the image for the Time of the image to be used as preview image provided by the setup file....
2025-04-21T17:19:59 Establishing connection(s)...
2025-04-21T17:19:59 Looking for images...
2025-04-21T17:19:59 114 possible files found.
2025-04-21T17:19:59 Listing maximum 1 images between dates 2020-12-05 - 2020-12-05 between times of the day 12:20:00 - 12:20:59...
2025-04-21T17:19:59 Listing maximum 1 images between dates 2020-12-05 - 2020-12-05 between times of the day 12:20:00 - 12:20:59...
2025-04-21T17:19:59 0 images found.
2025-04-21T17:19:59 Checking existing images...
2025-04-21T17:19:59 0 images to be downloaded.
2025-04-21T17:19:59 Can not find the image for the Time of the image to be used as preview image provided by the setup file. It is removed from the setup.
2025-04-21T17:19:59 Looking for a suitable image...
2025-04-21T17:19:59 20.04.2025
2025-04-21T17:19:59 Establishing connection(s)...
2025-04-21T17:19:59 Looking for images...
2025-04-21T17:20:00 125 possible files found.
2025-04-21T17:20:00 Listing maximum 1 images between dates 2025-04-20 - 2025-04-20 between times of the day 09:00:00 - 18:59:59...
2025-04-21T17:20:00 Listing maximum 1 images between dates 2025-04-20 - 2025-04-20 between times of the day 09:00:00 - 18:59:59...
2025-04-21T17:20:00 1 images found.
2025-04-21T17:20:00 Checking existing images...
2025-04-21T17:20:00 1 images to be downloaded.
2025-04-21T17:20:00 Downloading/updating images...
2025-04-21T17:20:00 Image: 
2025-04-21T17:20:00 1 images were downloaded.
2025-04-21T17:20:00 Preview image downloaded/updated for camera: PHENOCAM - harvard
2025-04-21T17:20:03 Preparing report...
2025-04-21T17:20:03 Result plots are saved as /var/www/html/data/operational/phenocam_ml_p1_nrt/harvard/results.html
2025-04-21T17:20:03 Report is saved as /var/www/html/data/operational/phenocam_ml_p1_nrt/harvard/report.html